align_allele given a data.table of pid,a1,a2 get a list of SNPs where alleles are flipped wrt to basis referenceflip_allele.Rdalign_allele given a data.table of pid,a1,a2 get a list of SNPs where alleles are flipped wrt to basis reference
flip_allele(DT, ref.DT)
| DT | - a data.table object - columns chr,position,a1 and a2 |
|---|---|
| ref.DT | - a data.table of reference alleles (see details) |
an index wrt to DT of OR that require flipping