get_gwas_data integrate GWAS summary data with support filesget_gwas_data.Rdget_gwas_data integrate GWAS summary data with support files
get_gwas_data(trait_manifest_file, snp_manifest_file, data_dir, filter_snps_by_manifest = FALSE)
| trait_manifest_file | character vector file path to GWAS manifest file |
|---|---|
| snp_manifest_file | character vector file path to snp manifest |
| data_dir | character vector file path to location of GWAS summary stats |
| filter_snps_by_manifest | boolean - whether to prefilter the by snp manifest. This should be true if you wish to take a subset of SNPs |
data.table object