vcf2snpmatrix convert a vcf file to snpMatrix objectvcf2snpmatrix.Rdconvert a vcf file to snpMatrix object
vcf2snpmatrix convert a vcf file to snpMatrix object
vcf2snpmatrix(vcf, bcft, region_file, quiet = TRUE)
| vcf | a scalar - path to vcf file |
|---|---|
| bcft | a scalar - path to bcftools binary |
| region_file | a scalar - path to a file satisfying -R bcftools criteria (optional) |
| quiet | a boolean - if set to false then debug information shown (default = FALSE) |
a list with two slots. sm is the snpMatrix object and info is a data.table describes SNPs