group.multi.Rdgroup.multi(SM2, snp.data, min.mppi = 0.01, r2.minmerge = 0.5)
| SM2 | snpmod object |
|---|---|
| snp.data | SnpMatrix for r2 calculation |
| min.mppi | trim snp groups with total MPPI < min.mppi in all diseases |
| r2.minmerge | merge groups with minimum between-group r2 > r2.minmerge |
list with three components.
First is a data.frame with each row giving summary statistics for each group.
Second is a groups object, each elements ordered according to the rows of the summary
Third is the r2 matrix calculated.