Summarise a snpmod object

guess.summ

guess.summ(results, groups = NULL, snps = NULL, snp.data = NULL,
  position = "position", tag.thr = 0.8, pp.thr = 0.01,
  method = "complete")

Arguments

results

an object of class snpmod, or a named list of such objects
groups

object of class groups. If supplied, all SNPs here will be summarised, and grouped according to this structure
snps

data.frame giving details of the SNPs
snp.data

if groups is missing, tag groups are determined from this object of class SnpMatrix
position

name of column in snps data.frame giving SNP position. default="position"
tag.thr

if groups is missing, threshold at which to tag
pp.thr

if groups is missing, threshold above which SNPs are selected for summary.
method

if groups is missing, method to determine tag groups using heirarchical clustering, default is "complete"

Value

data.frame