coloc functions need to be able to link summary stats from two
different datasets and they do this through snp identifiers. This
function takes the output of susie_rss() and adds snp
identifiers. It is entirely the user's responsibility to ensure
snp identifiers are in the correct order, coloc cannot make any
sanity checks.
Usage
annotate_susie(res, snp, LD)
Arguments
- res
output of susie_rss()
- snp
vector of snp identifiers
- LD
matrix of LD (r) between snps in snp
identifiers. Columns, rows should be named by a string that
exists in the vector snp
Value
res with column names added to some components
Details
Note: this annotation step is not needed if you use runsusie() -
this is only required if you use the susieR functions directly
