check alignment

Source: R/check.R

check alignment between beta and LD

check_alignment(D, thr = 0.2, do_plot = TRUE)

check.alignment(...)

Arguments

D

a coloc dataset

thr

plot SNP pairs in absolute LD > thr

do_plot

if TRUE (default) plot the diagnostic

...

arguments passed to check_alignment()

Value

proportion of pairs that are positive

Author

Chris Wallace