Bayesian colocalisation analysis using data.frames

coloc.abf.datasets(
  df1,
  df2,
  snps = intersect(setdiff(colnames(df1), response1), setdiff(colnames(df2),
    response2)),
  response1 = "Y",
  response2 = "Y",
  ...
)

Arguments

df1	dataset 1
df2	dataset 2
snps	col.names for snps
response1	col.name for response in dataset 1
response2	col.name for response in dataset 2
...	parameters passed to `coloc.abf.snpStats`

Value

output of coloc.abf

Details

Converts genetic data to snpStats objects, generates p values via score tests, then runs coloc.abf